Text-based database searching
- National Center for Biotechnology
Information (NCBI)
ENTREZ Home http://www.ncbi.nlm.nih.gov/Entrez/
ENTREZ Help: http://www.ncbi.nlm.nih.gov/Entrez/entrezhelp.html - European Bioinformatics Institute
(EBI)
SRS http://srs.ebi.ac.uk/
SRS Help http://srs.ebi.ac.uk/srs5/man/mi_srswww.html - GenomeNet (Kyoto Univeristy and University
of Tokyo)
DBGET http://www.genome.ad.jp/dbget/dbget2.html
DBGET Hepl http://www.genome.ad.jp/dbget_manual.html
Sequence Searching
Blast FTP site ftp://ncbi.nlm.nih.gov/blast/
FASTA at EBI http://www2.ebi.ac.uk/fasta3/
FASTA FTP: ftp://ftp.virgina.edu/pub/fasta
Seqence search site: http://sss.stanford.edu/sss/ Softwares
WUBlast Software http://blast.wustl.edu/
Clusta lw software: ftp://ftp-igbmc.u-strasbg.fr/pub/ClustralW/
HMMER software http://hmmer.wustl.edu/
SAM: http://www.cse.ucsc.edu/research/compbio/sam.html
PFTOOLS http://ulrec3.unil.ch:80/profile/
HMMpro http://www.netid.com
GENEWISE http://www.sanger.ac.uk/Software/Wise2/
PROBE ftp://ncbi.nlm.nih.gov/pub/neuwald/probe1.0/
META-MEME http://www.cse.ucsd.edu/users/bgrundy/metameme.1.o.html
Blocks http://www.blocks.fhcrc.org
BCM Search Launcher http://kiwi.imgen.bcm.tmc.edu:8088/searchlauncher/launcher.html
WashU IBC http://www.ibc.wustl.edu/service/clustal.html